PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G11830.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 578aa    MW: 62039.2 Da    PI: 6.6783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G11830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.00011460503654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  OMERI03G11830.1 460 KATCKKRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRQL 503
                      56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.563454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-6460512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-9464514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MASPPPPPQP PSPSAATAGA AAAPVDALFL QNLMSRVQLR PPFLDTNSFL TQDLDEFLLN  60
EFAALSAAAG ASDDDDGGED GEGEGSDGEV VSGEARRRRT LAREEAKLEK EIVRLVLAGE  120
AEEALKPNSG QSVAVGDHHI CVGFHDDSGG EYRVWEWHGH VMIFDDEDGY SAEYIYGNHF  180
EPLAAATARA KKKEKEKREK ELSSGLRDLI VGDAGSGANG SKENGKGGAP RVVRRNVVNA  240
PAAPARFQKQ QLCTWIRHDD LDMLTDELER KRVIASSKHP NLSFRLLSLF SGYMKDDVSS  300
AVETQLAESC RLESGVETFR LLVSSVAVKC EASNSPSTTV GFDRMIAADY DLFHHMSFSP  360
SLQNLQSPTF FTTRSSESYL GESSIYGGGA RPALAQFSYS QPIAATSAAH LVRWTAAGEP  420
MTGDGGFRSS KRLKTATTAT TQSPRHGVKC HAKPRNQTTK ATCKKRSQKL GDKITALQQL  480
VSPYGKTDTA SVLHEAAACI RQLHQQIQIL TAPYPGTSSS SASSQQVDAG GGGGTATELR  540
RRGLCVAALS PAVVSLAAEG GRRRTDVEDQ KSIWFSNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK0610800.0AK061080.1 Oryza sativa Japonica Group cDNA clone:006-206-F02, full insert sequence.
GenBankAK0710430.0AK071043.1 Oryza sativa Japonica Group cDNA clone:J023079J04, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CYU50.0A0A0E0CYU5_9ORYZ; Uncharacterized protein
STRINGOMERI03G11900.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-17bHLH family protein