PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09250.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 453aa    MW: 49206.5 Da    PI: 10.6541
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09250.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.34.5e-20369431163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+
  OMERI03G09250.6 369 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 431
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-7142170IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.7E-19209337No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-15364427No hitNo description
SMARTSM003381.0E-19369433IPR004827Basic-leucine zipper domain
PfamPF001709.2E-18369431IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587371434IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-9372428No hitNo description
CDDcd147021.60E-19374425No hitNo description
PROSITE patternPS000360376391IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSRAKILHRR FVLLGKKKSG GPIRPTSLKR IKCVTLFSPY PVFPLHNQSE IEREGGGGDF  60
VRKREAAATS CARGRATGQR RQCPPFSILL PLIPPPADPF PFSILLPLIR RRAGSWLSCS  120
CTSSSQSRAR SSRLSPRFFR LSRPMMPPYG TPPPYAAMYA QGTPYQQAPM LPGSHPYNPY  180
PGQSPNGTVQ TPTSAGGTET DKSGKSKRKT PLKRSKGSLG NLDVVATKNK KAPAKPSASS  240
SNEGSSHSES GSESSSEGSS TNSKSGSRTK DGSEHGQGND ASNKGATAQN SAVEPVQAST  300
GPVVLNPMMP YWPVPPPMAG PATGVNMGMD YWGTPTSVPM HNKVIAAPAS APSSNSRDVV  360
LSDPAIQDER ELKRQKRKQS NRESARRSRL RKQAEWEEVA NRADLLKQEN SSLKEELKQL  420
QEKCNSLTSE NTTLHEKLKE LEGEKSNGNW YKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385391RRSRLRK
2385392RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665630.0AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632857.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632859.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632860.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632861.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879940.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879941.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B25e-68BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0E0CXR20.0A0A0E0CXR2_9ORYZ; Uncharacterized protein
STRINGOMERI03G09300.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-42basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]