PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09250.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 508aa    MW: 55263.1 Da    PI: 10.4464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09250.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.15.4e-20424486163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+
  OMERI03G09250.5 424 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 486
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.1E-26142225IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-18264392No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-15419482No hitNo description
PfamPF001701.1E-17424486IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-19424488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587426489IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-9427483No hitNo description
CDDcd147021.16E-20429480No hitNo description
PROSITE patternPS000360431446IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSRAKILHRR FVLLGKKKSG GPIRPTSLKR IKCVTLFSPY PVFPLHNQSE IEREGGGGDF  60
VRKREAAATS CARGRATGQR RQCPPFSILL PLIPPPADPF PFSILLPLIR RRAGSWLSCS  120
CTSSSQSRAR SSRLSPRFFR LSRPNEQSTP TNPPTAYPDW SQFQAYYNPA GTAPMTPPGF  180
FHPNVAPSPQ GHPYMWGPQM MPPYGTPPPY AAMYAQGTPY QQAPMLPGSH PYNPYPGQSP  240
NGTVQTPTSA GGTETDKSGK SKRKTPLKRS KGSLGNLDVV ATKNKKAPAK PSASSSNEGS  300
SHSESGSESS SEGSSTNSKS GSRTKDGSEH GQGNDASNKG ATAQNSAVEP VQASTGPVVL  360
NPMMPYWPVP PPMAGPATGV NMGMDYWGTP TSVPMHNKVI AAPASAPSSN SRDVVLSDPA  420
IQDERELKRQ KRKQSNRESA RRSRLRKQAE WEEVANRADL LKQENSSLKE ELKQLQEKCN  480
SLTSENTTLH EKLKELEGEK SNGNWYKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440446RRSRLRK
2440447RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665630.0AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632857.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632859.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632860.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632861.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879940.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879941.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B28e-82BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0E0CXR10.0A0A0E0CXR1_9ORYZ; Uncharacterized protein
STRINGOMERI03G09300.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-52basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]