PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09250.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 520aa    MW: 56899.5 Da    PI: 10.3905
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09250.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1635.6e-20436498163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+
  OMERI03G09250.2 436 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 498
                      89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.3E-29138237IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-18276404No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-15431494No hitNo description
SMARTSM003381.0E-19436500IPR004827Basic-leucine zipper domain
PfamPF001701.1E-17436498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587438501IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-9439495No hitNo description
CDDcd147021.63E-19441492No hitNo description
PROSITE patternPS000360443458IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MTTFSEVNSS IKWICIRKKK QHKKDRRHIK NAKPTDPPRQ FHILNPQIAP RGHRADLPRT  60
LAGLEFMTGF GFHRPHERKK RPETNRELKS HGLLGGREVE ALATDLHSTP IQQRPGGCER  120
GSAPRWRRLL QREAAPGMGK GEVATRSKSQ KSSATQNEQS TPTNPPTAYP DWSQFQAYYN  180
PAGTAPMTPP GFFHPNVAPS PQGHPYMWGP QMMPPYGTPP PYAAMYAQGT PYQQAPMLPG  240
SHPYNPYPGQ SPNGTVQTPT SAGGTETDKS GKSKRKTPLK RSKGSLGNLD VVATKNKKAP  300
AKPSASSSNE GSSHSESGSE SSSEGSSTNS KSGSRTKDGS EHGQGNDASN KGATAQNSAV  360
EPVQASTGPV VLNPMMPYWP VPPPMAGPAT GVNMGMDYWG TPTSVPMHNK VIAAPASAPS  420
SNSRDVVLSD PAIQDERELK RQKRKQSNRE SARRSRLRKQ AEWEEVANRA DLLKQENSSL  480
KEELKQLQEK CNSLTSENTT LHEKLKELEG EKSNGNWYKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452458RRSRLRK
2452459RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665630.0AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632857.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632859.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632860.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632861.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879940.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879941.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B29e-82BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0E0CXQ80.0A0A0E0CXQ8_9ORYZ; Uncharacterized protein
STRINGOMERI03G09300.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-52basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]