PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G08820.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 833aa MW: 90861.8 Da PI: 6.2659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G08820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	660	708	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OMERI03G08820.1 660 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 708 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	9.286	1	86	IPR000626	Ubiquitin domain
SuperFamily	SSF54236	6.69E-5	2	100	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	3.8E-7	3	97	No hit	No description
SuperFamily	SSF81383	5.36E-14	334	403	IPR001810	F-box domain
PROSITE profile	PS50181	11.458	334	380	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	7.4E-12	337	423	No hit	No description
Pfam	PF12937	2.3E-6	339	381	IPR001810	F-box domain
SMART	SM00256	9.7E-6	340	380	IPR001810	F-box domain
CDD	cd00083	3.09E-11	655	712	No hit	No description
SuperFamily	SSF47459	4.58E-17	655	723	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	657	707	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	657	724	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-9	660	708	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	663	713	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MKLRVRSMDQ RGGGAAETHR VQLPDTATLS DVKAFLATKL SAAQPVPAES VRLTLNRSEE 60 LLTPDPSATL PALGLASGDL LYFTLSPLPS PSPPPQPQPQ AQPLPRNPNP DVPSIAGAVG 120 PTKSPVESGS SSSMPQALCT NPGLPVASDP HPPPDVVMAE AFAAIKSKWS LVVGAMKREM 180 ENVGGADGTV ICRLVVALHA ALLDAGFLYA NPVGSCLQLP QNWASGSFVP VSMKYTLPEL 240 VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSEVRRL CLELPELAPL LYLDSDEVST 300 AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMTL PGDVKVKVLE FVPGVDLARV 360 QCTCKELRDL AADDNLWKKK CEMEFNTQGE SSRVGRNWKE RFGAAWKVST NKGQKRPSPS 420 FFNYGWGDPY SPHGFPVIGG DSDMFPFIGH PNLLGRSFGN QRRNISPSCS FGGHHRNFLA 480 DKYTRGNYMQ KPVTQPGRWF ILLVFHSLLC QYIVIGLSLM WYHLVDLVQM YSPPCSAAAS 540 SQGHCFAVGA NQLASLDLAM DFDEPILFPV HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL 600 KGSKRKGSGE GSSSLHSQEE TGEMPQRELS MEHTGEKAGD ADASREEYVH VRAKRGQATN 660 SHSLAERFRR EKINERMKLL QDLVPGCNKI TGKAMMLDEI INYVQSLQRQ VEFLSMKLST 720 ISPELNSDLD LQDILCSQDA RSAFLGCSPQ LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP 780 ADVHLARAAH LASFPQQRGL IWDEELRNIA PAGFASDAAG TSSLVNSDSM KVE

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MKLRVRSMDQ RGGGAAETHR VQLPDTATLS DVKAFLATKL SAAQPVPAES VRLTLNRSEE  60
LLTPDPSATL PALGLASGDL LYFTLSPLPS PSPPPQPQPQ AQPLPRNPNP DVPSIAGAVG  120
PTKSPVESGS SSSMPQALCT NPGLPVASDP HPPPDVVMAE AFAAIKSKWS LVVGAMKREM  180
ENVGGADGTV ICRLVVALHA ALLDAGFLYA NPVGSCLQLP QNWASGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSEVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMTL PGDVKVKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQGE SSRVGRNWKE RFGAAWKVST NKGQKRPSPS  420
FFNYGWGDPY SPHGFPVIGG DSDMFPFIGH PNLLGRSFGN QRRNISPSCS FGGHHRNFLA  480
DKYTRGNYMQ KPVTQPGRWF ILLVFHSLLC QYIVIGLSLM WYHLVDLVQM YSPPCSAAAS  540
SQGHCFAVGA NQLASLDLAM DFDEPILFPV HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL  600
KGSKRKGSGE GSSSLHSQEE TGEMPQRELS MEHTGEKAGD ADASREEYVH VRAKRGQATN  660
SHSLAERFRR EKINERMKLL QDLVPGCNKI TGKAMMLDEI INYVQSLQRQ VEFLSMKLST  720
ISPELNSDLD LQDILCSQDA RSAFLGCSPQ LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP  780
ADVHLARAAH LASFPQQRGL IWDEELRNIA PAGFASDAAG TSSLVNSDSM KVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0E0CXJ4	0.0	A0A0E0CXJ4_9ORYZ; Uncharacterized protein
STRING	LPERR03G08460.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-45	bHLH family protein