PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G07870.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 499aa    MW: 56020.5 Da    PI: 8.5413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G07870.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-192543401199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  OMERI03G07870.5 254 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 340
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B346.85.5e-154004721487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++ k+e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL  gD++ F++ ++
  OMERI03G07870.5 400 QYLNVPMEFQEAHEYAKRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAIGDTCFFRVLRE 472
                      56889********999776..4554.4599*******9876667777************************96654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.104.1E-4035184IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.16E-3435181IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003641805069No hitNo description
SMARTSM0036915072IPR003591Leucine-rich repeat, typical subtype
PfamPF138553.8E-751109IPR001611Leucine-rich repeat
PROSITE profilePS514507.1655273IPR001611Leucine-rich repeat
SMARTSM00364207392No hitNo description
SMARTSM003699.97395IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.3497596IPR001611Leucine-rich repeat
SMARTSM0036413096115No hitNo description
SMARTSM003692496119IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036452119138No hitNo description
PROSITE profilePS514506.249121142IPR001611Leucine-rich repeat
SMARTSM00364230142161No hitNo description
SMARTSM003690.016142165IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.534144165IPR001611Leucine-rich repeat
Gene3DG3DSA:2.40.330.101.2E-20241343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19243347IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-20244339No hitNo description
PROSITE profilePS5086314.156244341IPR003340B3 DNA binding domain
SMARTSM010194.8E-16246341IPR003340B3 DNA binding domain
PfamPF023621.7E-15254340IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-24383494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-15384475IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-5385494IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308387494IPR003340B3 DNA binding domain
PfamPF023627.3E-13401472IPR003340B3 DNA binding domain
CDDcd100171.33E-10402468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVLAGNLV ESIPANIGYL RNLKILTLDR  60
NKISVLPEEL GSLSNLQQLS ISQNSLSRLP KSVGDLRNML LLNVSVNKLI ALPESIGGCS  120
SLEELQANGN SIEDVPSSIC NLVCLKSLSL NGNKIRQLPQ NLLKDCKALQ NISLHDNPIS  180
MDQFQQMDGF TEFEARRRKK FDKQIDSNVM MSSTALDEGI DLNYQKTNSQ IMEDQMANIR  240
STDFEFFRII LPGSSKTKLK LPYKFARELG DRELREARLR VAGEGRRPWD VKVFDDDVSG  300
DVYLGRGWQE FARAHDLRDG HFLVFRYDGA AAFTVTVFDE TMCRRDYRRR HHDAADSGSS  360
SSDSSDAAAA TAAAEGVGDV ALSQFAVTLR QCNLEDKQAQ YLNVPMEFQE AHEYAKREKV  420
VLRMRGEAWT VRLKHSRRER GQRTAFRYGW HRFCVDNGLA IGDTCFFRVL REGDLRRGGG  480
ADDHVLKVAV RKADGTTLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4u06_A6e-19720625283LIC10831
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-170B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-171Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0CX370.0A0A0E0CX37_9ORYZ; Uncharacterized protein
STRINGOGLUM03G08230.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]