PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G06040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 25876.9 Da PI: 9.6896 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.5 | 4.2e-17 | 137 | 225 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp++f+e++ k + +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD +vF+l++ ++f +v OMERI03G06040.1 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDERFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDAIVFQLVKPTTF--KV 222 89************************422..4568***************..566555..9**********************9986666..77 PP EEE CS B3 95 kvf 97 +f OMERI03G06040.1 223 LIF 225 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 128 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 130 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.49E-27 | 135 | 225 | No hit | No description |
SMART | SM01019 | 8.5E-18 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-15 | 137 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA IAPKTPSPMK QKRRRIIEAA 60 VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA 120 GKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDERF 180 DTNYLAYKNG LSGGWAGFAL DHGLLDGDAI VFQLVKPTTF KVLIFTEHYV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 55 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122017 | 0.0 | AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633231.1 | 1e-161 | B3 domain-containing protein Os03g0184500 | ||||
Swissprot | Q10QS9 | 1e-162 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A0E0CWB5 | 1e-169 | A0A0E0CWB5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G06210.1 | 1e-161 | (Oryza glumipatula) | ||||
STRING | ORUFI03G06050.1 | 1e-161 | (Oryza rufipogon) | ||||
STRING | OS03T0184500-01 | 1e-161 | (Oryza sativa) | ||||
STRING | ONIVA02G06710.1 | 1e-161 | (Oryza nivara) | ||||
STRING | ORGLA03G0060000.1 | 1e-161 | (Oryza glaberrima) | ||||
STRING | OBART03G06210.1 | 1e-161 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-50 | B3 family protein |
Publications ? help Back to Top | |||
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