PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G05270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 239aa MW: 26288.3 Da PI: 9.3957 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 107 | 1.5e-33 | 137 | 193 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl k+rkpylheSRh+hA++R+Rg+gGrF OMERI03G05270.1 137 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKNRKPYLHESRHQHAMKRARGTGGRF 193 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.8E-39 | 135 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.283 | 136 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.3E-29 | 138 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-25 | 139 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 141 | 161 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-25 | 170 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLPPHLTENG TVMIQFGHKM PDYESSATQS TSGSPREVSG MSEGSLNEQN DQSGNLDGYT 60 KSDEGKMMSA LSLGKSETVY AHSEPDRSQP FGISYPYADS FYGGAVATYG THAIMHPQIV 120 GVMSSSRVPL PIEPATEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKNR KPYLHESRHQ 180 HAMKRARGTG GRFLNTKQQP EASDGGTPRL VSANGVVFSK HEHSLSSSDL HHRRAKEGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-24 | 137 | 207 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832705 | 0.0 | CT832705.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105G23, full insert sequence. | |||
GenBank | EU847006 | 0.0 | EU847006.1 Oryza sativa Japonica Group clone KCS364E08 CCAAT-binding transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631822.1 | 1e-178 | nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A0E0CVZ9 | 1e-176 | A0A0E0CVZ9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GHJ6 | 1e-176 | A0A0E0GHJ6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NQF1 | 1e-176 | A0A0E0NQF1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XD39 | 1e-176 | A2XD39_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q10R14 | 1e-176 | Q10R14_ORYSJ; CCAAT-binding transcription factor | ||||
STRING | OMERI03G05270.1 | 1e-177 | (Oryza meridionalis) | ||||
STRING | ORUFI03G05370.1 | 1e-177 | (Oryza rufipogon) | ||||
STRING | ONIVA03G05390.1 | 1e-177 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 2e-44 | nuclear factor Y, subunit A6 |