PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G01810.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 594aa    MW: 62705.1 Da    PI: 6.6775
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G01810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-093483851954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  OMERI03G01810.1 348 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 385
                      564459******************************88 PP
2BELL88.95.3e-29211280372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       elq+ k kL  +leeVd+rY++y+eq+++v++ Feavag  +a+ Yt++A ++iSrhFr+L+d i+ q+
  OMERI03G01810.1 211 LELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAAAYTAVAARTISRHFRSLRDGIVAQL 280
                      58999**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-44142278IPR006563POX domain
PfamPF075267.5E-43148276IPR006563POX domain
PROSITE profilePS5007112.017326389IPR001356Homeobox domain
SMARTSM003894.7E-9329393IPR001356Homeobox domain
CDDcd000862.81E-12329390No hitNo description
SuperFamilySSF466891.67E-17330396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-28332395IPR009057Homeodomain-like
PfamPF059207.8E-18346385IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAHDPTLGFA DYFSAADASA SSVTTLMPAM DEAAPELFGL QAGMELLGVR GLGMSMMPGA  60
AGKVAALVAD AGDDDDGGGG GGSTMCFLSE QHQQPSQAPL SLSLCRPDGV LHLGGAARPQ  120
HQLAPAAPWM THHDASSSAP QVHGAWHLRS SRFLLPAQQL LQEFCSLPVD STKRGTGAKA  180
ATQQEDGRGD GSSSSSASWT PSPQIQAMEA LELQRLKDKL YIMLEEVDRR YRRYCEQMRA  240
VAGGFEAVAG ERAAAAYTAV AARTISRHFR SLRDGIVAQL QAARKALGEK DVSAAGTTRG  300
QTPRLRVIDQ CIRHHKSLQG VAAMDSHPWR PQRGLPDRAV TILRAWLFEH FLHPYPSDVD  360
KHILARQTGL SRSQVSNWFI NARVRLWKPM VEEMYVEEMK DQDGGDGGGG QGSLNPKPTC  420
SHASEARGGQ QLVVGDGDGG EQKPTRAQLR HDAGSLASVV NVDVAAGAGG VARLHQAENF  480
GIMDHLDFDA YDDSHHGGFG GVGGVSLTLG LQQHGSHGGG GVNIAFGAPG SAHGGAGFLY  540
PGEQMAPDAV HPGHGHHVVG GQFGVAMDGD AASHAQERYR SLTAGFHLLR DLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-17335393563Homeobox protein Meis2
4xrm_B4e-17335393563Homeobox protein Meis2
5bng_A3e-17335393159Homeobox protein Meis2
5bng_B3e-17335393159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212070.0AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628192.10.0homeobox protein BEL1 homolog
TrEMBLA0A0E0CUF40.0A0A0E0CUF4_9ORYZ; Uncharacterized protein
STRINGOS03T0124000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-77TALE family protein