PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G01730.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 395aa MW: 44569.1 Da PI: 10.3763 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.6e-30 | 186 | 236 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s OMERI03G01730.4 186 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 236 79***********************************************86 PP | |||||||
2 | K-box | 61.5 | 3.4e-21 | 260 | 337 | 18 | 99 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qq+++k +e L++ +R+llGe+L+++s++eL++Le +Le+sl +iR +K++ll eq+ +l++ke +l+++n++Lr k + OMERI03G01730.4 260 QQDIEK----LEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELRDKCK 337 444444....466889**************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.8E-41 | 178 | 237 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.735 | 178 | 238 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-32 | 180 | 260 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 180 | 200 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.12E-42 | 180 | 251 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 180 | 234 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-27 | 187 | 234 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 200 | 215 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 215 | 236 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.096 | 252 | 342 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.1E-21 | 264 | 336 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGGSGTNFFP GWEISASLSL FVLPGCITTS APGCGGHDDD KKRKRNRTHS SCCRCLCPPL 60 PRWGGHYANK GKRQHPQGPK RKAEEEEVER RERGKKRERA SEQLGLRPNP TAPPPPLLAI 120 FGESPFADSQ IPFRFTTFAL SAAPPIGIKK KRAASLAPPP PPRRPQPFLW LVHRRSKMVR 180 GKTQMKRIEN PTSRQVTFSK RRNGLLKKAF ELSVLCDAEV ALIVFSPRGK LYEFASASTQ 240 KTIERYRTYT KENIGNKTVQ QDIEKLEALE TYKRKLLGEK LDECSIEELH SLEVKLERSL 300 ISIRGRKTKL LEEQVAKLRE KEMKLRKDNE ELRDKCKNQP PLSAPLTVRA EDENPDRNIN 360 TTNDNMDVET ELFIGLPGRS RSSGAAEDSP AMPHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-18 | 180 | 249 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-18 | 180 | 249 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-18 | 180 | 249 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-18 | 180 | 249 | 2 | 71 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 97 | RRERGKKRE |
2 | 93 | 99 | GKKRERA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210475 | 0.0 | AC210475.1 Oryza glaberrima clone OG_BBa0054O06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630979.1 | 1e-148 | MADS-box transcription factor 50 | ||||
Refseq | XP_025880188.1 | 1e-148 | MADS-box transcription factor 50 | ||||
Swissprot | Q9XJ60 | 1e-149 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A0E0CUE2 | 0.0 | A0A0E0CUE2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G01700.1 | 1e-158 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-64 | AGAMOUS-like 20 |