PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G33190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 272aa    MW: 28422.8 Da    PI: 4.9242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G33190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  OMERI02G33190.1 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.397966IPR017930Myb domain
SMARTSM007173.7E-121364IPR001005SANT/Myb domain
PfamPF002495.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-241569IPR009057Homeodomain-like
SuperFamilySSF466896.65E-181588IPR009057Homeodomain-like
CDDcd001671.68E-91662No hitNo description
PROSITE profilePS500904.69363120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.3E-670120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEEHIIC SLYISIGSSA FGCTTTTSNG GGVGVAPPQW PKLEALLPSR  120
PLPAVQPTDA VVATVQHPHH LVAGHTLATP AASATTSEAF QAAEHLDPAA ATGSNYMPGV  180
AGVEMTSSSS TVGGGVGFVA DYGLHDELYD FLFKCDSIGG AQGGIIPSSL PELQCPDGSA  240
IIGADEKFST WMSSSCDYGS GGAGDYVLGY DQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040570.0AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624187.16e-98uncharacterized protein LOC4330950
TrEMBLA0A0E0CSC70.0A0A0E0CSC7_9ORYZ; Uncharacterized protein
STRINGOMERI02G32470.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-56myb domain protein 84