PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G30990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 232aa    MW: 27367.9 Da    PI: 6.5177
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G30990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.21.2e-26112162252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      e ++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl
  OMERI02G30990.1 112 ERTLTFELVSQYFCLPIKQAARELNVGLTLLKRRCRVLGIPRWPHRKVKSL 162
                      5789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.47494183IPR003035RWP-RK domain
PfamPF020425.0E-22114162IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKWRFYGGH QFQSYSFHEE GNLFQDWSLD YVLGEDDPFF TRHFSTSVHS SFVQDELYTL  60
FNGDILSIWG DMKEDAYHKS HKDGSEKEEK LDHEKAMELQ LQRLPSGRQS GERTLTFELV  120
SQYFCLPIKQ AARELNVGLT LLKRRCRVLG IPRWPHRKVK SLETLIKNVQ ELGMETGQDE  180
DDNTRNAVEM LQQTKKLIEQ SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-170CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627113.11e-161protein RKD1
RefseqXP_015627115.11e-161protein RKD1
SwissprotQ9M9U92e-41RKD1_ARATH; Protein RKD1
TrEMBLA0A0E0CRF81e-173A0A0E0CRF8_9ORYZ; Uncharacterized protein
STRINGOMERI02G30190.11e-174(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-43RWP-RK domain-containing protein