PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G29760.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 184aa MW: 19595.9 Da PI: 8.4118

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G29760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	136.1	1e-42	28	121	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +++++lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e++ OMERI02G29760.1 28 ATNAELPMANLVRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFERA 121 68999**************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-25	28	121	IPR009072	Histone-fold
Pfam	PF00808	1.3E-13	31	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.57E-23	32	126	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAGNKKRGGR NMDQVEKAAV RSDGEGSATN AELPMANLVR LMKKVLPGKA KIGGAAKGLT 60 HDCAVEFVGF VGDEASEKAK AEHRRTVAPE DYLGSFGDLG FDRYVDPMDA YIHGYREFER 120 AGGNRRVAPP PAAATPLTPG GPTFTDAELQ FLRSVIPSRS DDQYNGSSPA IGGYGYGHGY 180 GKNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-24	33	117	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ300218	0.0	AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624776.1	1e-104	nuclear transcription factor Y subunit B-1
Swissprot	Q6Z348	1e-105	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A0E0CQW9	1e-131	A0A0E0CQW9_9ORYZ; Uncharacterized protein
STRING	OMERI02G28990.1	1e-132	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	7e-22	nuclear factor Y, subunit B4