PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G20160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 208aa    MW: 23200.9 Da    PI: 6.0163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G20160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.2e-3471241128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGf+F P+deelvv++L++kv+  +++  ++i+++  ++++Pw+L+ k+ +  ++wyfF++  +        +r+ ++gyW+  g d++v s
  OMERI02G20160.1   7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLSHRYNPWELNGKALQAGNQWYFFCNLTQ--------SRTSSNGYWSPIGADETVRS 91 
                      79*************************999.89**************966667789******9855........677889*************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++vglkktL f+ g+ ++g +t+W+mhey+l
  OMERI02G20160.1  92 -GGRNVGLKKTLLFFIGEPSEGIRTNWIMHEYHL 124
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-454167IPR003441NAC domain
PROSITE profilePS5100541.8147168IPR003441NAC domain
PfamPF023651.6E-218124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLSHRYNPW ELNGKALQAG  60
NQWYFFCNLT QSRTSSNGYW SPIGADETVR SGGRNVGLKK TLLFFIGEPS EGIRTNWIMH  120
EYHLLDGDCI AGGSSNLTSS SSNRKSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG  180
TELSCLDEVF LSLDDYDEDI NSGTVPIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-34617319173NAC domain-containing protein 19
3swm_B5e-34617319173NAC domain-containing protein 19
3swm_C5e-34617319173NAC domain-containing protein 19
3swm_D5e-34617319173NAC domain-containing protein 19
3swp_A5e-34617319173NAC domain-containing protein 19
3swp_B5e-34617319173NAC domain-containing protein 19
3swp_C5e-34617319173NAC domain-containing protein 19
3swp_D5e-34617319173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313770.0CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647372.11e-128PREDICTED: NAC transcription factor 29-like isoform X2
SwissprotQ8GWK64e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E0CLX41e-153A0A0E0CLX4_9ORYZ; Uncharacterized protein
STRINGLPERR02G16450.11e-131(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-60xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]