PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G19950.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 728aa    MW: 76645.7 Da    PI: 10.2374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G19950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08226270244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+ eEd  l  +v+++G g+W  I ++     +Rt  q++ rw
  OMERI02G19950.1 226 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSTRTHLQLQQRW 270
                      68******************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.924220278IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-11220277IPR009057Homeodomain-like
SMARTSM007171.4E-6224276IPR001005SANT/Myb domain
PfamPF002498.3E-7226270IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-13227286IPR009057Homeodomain-like
CDDcd116601.02E-17228275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MKKEFPGQAP TSRLHSEMDA AAAAAAGGGA AKRKRSFSED DAYLILHRYQ PATILTMLQE  60
MGKQVGAGKG KGIDWRALVR RTSTGITSAR EYQMLWRHLA YGHEFVESVE PAALPLDDGS  120
DLECEIEIVP APGNEALAEA TSFAKTIITG SSREQASGQR VNSEAAALNT PNEKIVRVPS  180
DKQLVPGHRL TNGTGPVSSS KQPSHTGSSP DPLDPNGHPK KKKKPKPWSR EEDMELGAGV  240
QKHGEGNWME ILHKYKFDST RTHLQLQQRW ALICKRQGST KPATPKIPNV MSEELKAAQK  300
AFSLAIGTTR SSTLRPGGVP HHNPMVTTTT PEVKSVTAPS PLPVPVHVVP VPVPVQPVQV  360
QLPPPQLHQA PAQSAPPPPK VSNASNKSRN NSKKQVAQSI PVNGPLSIQE AALAAGGRIA  420
EPSVATNFLK AAQSTKAVHI RSRGTGSSKS STGSKTPTVA GEPGIQLGSD QHLELQSTGG  480
PSPVLTAHAT EQVHNVSEVA GVNPLGQSVG VHLSETKKTL NTTPVSGSSD KMEIDDNSNY  540
FAVTMEDLFP EDVKQKDVQD PKIEEAIDPK DADMLEFDRF VAQGCLNKDN VDKSKAAKIA  600
PEAQGVIGSQ KKQLKTLPTV GKSNPVFAGP PATAKKTKAP VPQGGMSSGI VGAGNVGVLN  660
RSLGGKAPAP ATAGTQSTVQ KQQSMSSKGN LLVPKNVAPG TVTPANNRAN TAVNGASKVN  720
PPASQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224PKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLA0A0E0CLT70.0A0A0E0CLT7_9ORYZ; Uncharacterized protein
STRINGOMERI02G19100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-39MYB_related family protein