PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G17450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24470.5 Da PI: 8.4591 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 99 | 136 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+aa OMERI02G17450.2 99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARAAF 136 79**98..47*********4.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.49E-6 | 98 | 135 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0066 | 98 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAGGAIANVS VKCSGKDSLP VDFPKPSDNE NSVEVAHPNI KPFSVHPLPL TKNSDVLLES 60 SNGSDSLKEE KNHYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI 120 HLGTVGTQEE AARAAFMCGR EPNFELSEEE KKELQNYTWK DFLDMTRDTI TSKKQRKVGL 180 IRRNKTDLLI GQSDGDTEMI NGGGSSHSED GDAETSAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 0.0 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 0.0 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 0.0 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626905.1 | 1e-134 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626906.1 | 1e-134 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0E0CKV3 | 1e-163 | A0A0E0CKV3_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA02G18870.1 | 1e-140 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 5e-41 | ERF family protein |