PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G12230.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 321aa    MW: 34323.4 Da    PI: 5.373
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G12230.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.1e-16136187458
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l   +   ++
  OMERI02G12230.3 136 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDAN---QQ 187
                      79**************************************9996555444...43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17133197IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185135187IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-13136188No hitNo description
PfamPF001703.1E-14136185IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-13137188No hitNo description
CDDcd147021.40E-23138188No hitNo description
PROSITE patternPS000360140155IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKKCPSELDF EAFFHDADAA ADQKPGGGPH PPPFAMFSAA DLSSFGFADS VTSTITGVIP  60
NHIWPQSQSL NARHPAVSTI ESQSSICAAA SPTSVTTLNM KESQTLGGTS GSDSDSESLL  120
DIEGGPCEQS TNPLDVKRMR RMVSNRESAR RSRKRKQAHL ADLETQVDQL RGENASLFKQ  180
LTDANQQFTT AVTDNRILKS DVEALRVKVK MAEDMVARGA LSCGLGHLGG LSPALNPRQA  240
CRVPDVLTGL DYAGDDPFTG LSPPEQVQMP GGGEVGDAWG WDNHSNGAMS KCFVSSATYK  300
NVMSQVNGLE FFRVLVSCQV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRSRKRK
2149156RRSRKRKQ
3151156SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706740.0AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBankRICRITA1A0.0L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625526.10.0bZIP transcription factor RISBZ3-like isoform X1
SwissprotQ6ETX00.0RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A0E0CIT20.0A0A0E0CIT2_9ORYZ; Uncharacterized protein
STRINGOMERI02G12050.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-39basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]