PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G12230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 301aa MW: 32105.7 Da PI: 5.3847 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.5 | 1.1e-16 | 146 | 197 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++ OMERI02G12230.2 146 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 197 79**************************************9995554...44443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-17 | 143 | 207 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.185 | 145 | 197 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-13 | 146 | 198 | No hit | No description |
Pfam | PF00170 | 2.8E-14 | 146 | 195 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-13 | 147 | 198 | No hit | No description |
CDD | cd14702 | 3.11E-23 | 148 | 198 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 150 | 165 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MKKCPSELDF EAFFHDADAA ADQKPGGGPH PPPFAMFSAA DLSSFGFADS VTSKYSGKAE 60 KESTITGVIP NHIWPQSQSL NARHPAVSTI ESQSSICAAA SPTSVTTLNM KESQTLGGTS 120 GSDSDSESLL DIEGGPCEQS TNPLDVKRMR RMVSNRESAR RSRKRKQAHL ADLETQVDQL 180 RGENASLFKQ LTDANQQFTT AVTDNRILKS DVEALRVKVK MAEDMVARGA LSCGLGHLGG 240 LSPALNPRQA CRVPDVLTGL DYAGDDPFTG LSPPEQVQMP GGGEVGDAWG WDNHSNGAMS 300 K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 165 | RRSRKRK |
2 | 159 | 166 | RRSRKRKQ |
3 | 161 | 166 | SRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070674 | 0.0 | AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence. | |||
GenBank | RICRITA1A | 0.0 | L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625526.1 | 0.0 | bZIP transcription factor RISBZ3-like isoform X1 | ||||
Swissprot | Q6ETX0 | 0.0 | RSBZ3_ORYSJ; bZIP transcription factor RISBZ3 | ||||
TrEMBL | A0A0E0CIT0 | 0.0 | A0A0E0CIT0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CIT1 | 0.0 | A0A0E0CIT1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G12050.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-39 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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