PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G09250.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 481aa    MW: 53473.5 Da    PI: 7.7493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G09250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-274998251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  OMERI02G09250.1 49 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFAS 98
                     8***********************************************86 PP
2K-box72.71.1e-24122213899
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + ee+  ++++ e++ L k+ie ++  + +llGe+L+s+s++eLq+Le qLeksl +iR+kK+++l++qi el++ke +l +en+ Lr + +
  OMERI02G09250.1 122 EGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSIRQKKQKMLMDQILELREKEMNLLKENMVLRDQCK 213
                      3678889*********************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.71640100IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-354099IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-2942118IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004296IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-274262IPR002100Transcription factor, MADS-box
PfamPF003199.8E-264996IPR002100Transcription factor, MADS-box
CDDcd002651.06E-3450117No hitNo description
PRINTSPR004041.5E-276277IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-277798IPR002100Transcription factor, MADS-box
PfamPF014861.7E-24125212IPR002487Transcription factor, K-box
PROSITE profilePS5129713.808128218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAAAAGGMGG GGEETTTTTT VVQVAAEASR KKPVEVRSAG RRGRREMRRI EDATSRQVTF  60
SKRRSGLLKK AFELSVLCDA EVALIVFSPR GRLYQFASAS SDLQRTIDRY LNHTKNSSAH  120
EEGEESCVQK WRSEATTLGK KIEAIEGYKS KLLGEGLGSC SVQELQELEV QLEKSLCSIR  180
QKKQKMLMDQ ILELREKEMN LLKENMVLRD QCKALSSPWS TSVGELKNKQ ADDHVHHHED  240
YSGGVRDDDD RRMMEDVETD LAAANQAGKV LKKGKKKQAK DELDRQKQAE KKRRRLEKAL  300
ANSAAIISEL EKKKQKKREE QQRLDEEGAA IAEAVALHVL IGEDSDDPCH LMLNKHRRCN  360
HWDHSAGFDF AVDAQGADIY PPDGLIQCAD HVYAPKGRYI DWGIGQPLPS WGEVKDLQLQ  420
APCYQGMFHQ SVACPGFIAA QAVSSLQIGG DSSDITSPSQ GATVVNRMLG ATNRLNLYRE  480
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A3e-1642121276Myocyte-specific enhancer factor 2B
1n6j_B3e-1642121276Myocyte-specific enhancer factor 2B
1tqe_P2e-1642121377Myocyte-specific enhancer factor 2B
1tqe_Q2e-1642121377Myocyte-specific enhancer factor 2B
1tqe_R2e-1642121377Myocyte-specific enhancer factor 2B
1tqe_S2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_A2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_B2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_C2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_D2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_E2e-1642121377Myocyte-specific enhancer factor 2B
6c9l_F2e-1642121377Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274294KKKQAKDELDRQKQAEKKRRR
2291295KRRRL
3292315RRRLEKALANSAAIISELEKKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218240.0AK121824.1 Oryza sativa Japonica Group cDNA clone:J033099F22, full insert sequence.
GenBankAP0040490.0AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067200.0AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CHM90.0A0A0E0CHM9_9ORYZ; Uncharacterized protein
STRINGOMERI02G09230.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-48AGAMOUS-like 20