PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G08510.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 263aa MW: 29131.9 Da PI: 9.6651

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G08510.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.7	5.6e-15	6	88	17	98
E--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp +fa+e + +++e ++ +l r W+vk+ +g+++l++GW +F++a+gL++gD +vF++dg f +v+vf+ OMERI02G08510.3 6 KLPDEFARELEAEERELRDAKLLVAGAgrrrrdRMWDVKV---VADGGVYLGRGWLRFARAHGLRDGDLLVFRYDGAAAF--TVTVFD 88 59******77777777777776444578888***...7778899**********************998888..888887 PP
2	B3	53.5	4.3e-17	136	209	14	86
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + l +p +f e+hg+ +e +++ +grsW+v+l++ r +++r+vl+ GW +F+ +ngL +gD++ F+ + OMERI02G08510.3 136 QYLNVPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERTVLRYGWHRFCADNGLAVGDTCFFRALR 209 56889******998665..455.45599***998887777788**********************9554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.916	1	90	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0025	3	90	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.1E-15	6	88	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-11	6	88	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-13	34	88	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.00E-12	41	88	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.8E-27	117	233	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-17	119	211	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.0E-10	121	233	IPR003340	B3 DNA binding domain
CDD	cd10017	3.41E-14	121	206	No hit	No description
PROSITE profile	PS50863	12.478	123	233	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-14	137	209	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MAMMQKLPDE FARELEAEER ELRDAKLLVA GAGRRRRDRM WDVKVVADGG VYLGRGWLRF 60 ARAHGLRDGD LLVFRYDGAA AFTVTVFDDG TMCRRAYHDA AGSGSSSDDN GEAAAAATSQ 120 FVVTLRQGNL GKKQAQYLNV PVEFQEAHGY AAREKVVLRM RGRSWTVRLK HTKGRRPRRE 180 RTVLRYGWHR FCADNGLAVG DTCFFRALRS GAGDVDDDGD GDHVLSVTVH KADGGNSLEG 240 SIIHRFASIS SFVACALITF KSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	RPRRER

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004191	1e-165	AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBank	AP004812	1e-165	AP004812.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0026H03.
GenBank	AP014958	1e-165	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-165	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628624.1	2e-83	B3 domain-containing protein Os03g0212300
Swissprot	Q10Q26	2e-84	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A0E0CHB6	0.0	A0A0E0CHB6_9ORYZ; Uncharacterized protein
STRING	OGLUM02G07480.1	1e-123	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	1e-12	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]