PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G08300.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 269aa    MW: 28156.3 Da    PI: 10.1195
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G08300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.1e-11184223342
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                      + k  rr+++NReAAr+sR+RKka+i++Le+    L++  
  OMERI02G08300.1 184 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLE 223
                      67999*************************8655555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8181226No hitNo description
SMARTSM003382.9E-8182245IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036184229IPR004827Basic-leucine zipper domain
PfamPF001707.5E-9185225IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.56E-7186229No hitNo description
PROSITE patternPS000360189204IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGDRPWQQQL QPNDQQASCS VTAGMMMQAS ATSSSIHGNN IIRKDPGGGY DMAELDHIFL  60
YLNSQDQASA AIQEQPQTLN IFPSQPMHAG EPSPKGSSSM AAINSAPSNN ALAIAAASSK  120
RPAAAAAAAG GQPSRLNNPA DQPSASGKDG KAAVVKKEGG GGGKHHGGAS SAAASEHEGP  180
KTPDAKTLRR LAQNREAARK SRLRKKAYIQ NLETSRIRLS QLEQELVQRS RTQGAILGGG  240
AFSAGIGGQS PGIYMHAYDQ KPTLINYYN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-115AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-115AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626935.11e-142transcription factor TGAL9-like isoform X1
SwissprotQ0E3421e-144TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLA0A0E0CH850.0A0A0E0CH85_9ORYZ; Uncharacterized protein
STRINGOMERI02G08210.11e-167(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-24bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]