PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G06720.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 467aa    MW: 48781.4 Da    PI: 6.8667
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G06720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40209285177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  OMERI02G06720.1 209 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 285
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33203271IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.111207284IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.29E-38208286IPR004333Transcription factor, SBP-box
PfamPF031103.2E-30210283IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMSSRLNAGA MAAPAAAAAD VVDFGYAAPM PPPYVGFDPA GMGGERQLFQ NGGACHGLYD  60
GGLDFSAAAA FQEAATLGVG LPGGNLLQSL APPAAAAAAA TPSSLQMPMM MSLPGLPATA  120
ADVYPFGGGG FVKREDGPVL DVVGGGGGGR IGLNLGRRTY FSPADVLAVD RLLLRSRLGG  180
MGMGMGMGMG MGVLGLGLAA AAHHHQPPRC QAEGCKADLS AAKHYHRRHK VCDFHAKAAA  240
VLAAGKQQRF CQQCSRFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS SKDSPPPPPS  300
KKGTDASIAS SYTSCDHHKA ASTTTASGVS CLQELADHHD VGGGHQAAMA APPPTLSLAA  360
LPPQEEDDDE DEDGGLGTVL MMQQHHQRRR LQHDGDGDAD ADDVAAAHHH LMRSLARQQH  420
RHSSGCSNNG DDDDNNNNNK LSCSSASDQQ NSSSNNTNMH FFEVDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-282102831184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266283KRSCRKRLTEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048380.0AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878836.10.0squamosa promoter-binding-like protein 5 isoform X2
SwissprotQ0E3F80.0SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A0E0CGJ70.0A0A0E0CGJ7_9ORYZ; Uncharacterized protein
STRINGOMERI02G06660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-33squamosa promoter binding protein-like 8