PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G06470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 284aa    MW: 30183.4 Da    PI: 5.343
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.69.9e-17129180458
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                      +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k   +l++  ++
  OMERI02G06470.1 129 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 180
                      79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-18126190IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174128180IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-13129181No hitNo description
PfamPF001703.7E-14129178IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-13130181No hitNo description
CDDcd147021.13E-23131181No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKKCPSELDL EAFIHGGSGG DADADHPLGI FSAADLSGFG FADSSTITGG IPNHIWHQSQ  60
SLNARHPAVS TTIESQSSIY AATSPTSATN LNMKESQTLG GTSGSDSESE SLLDIEGGPC  120
EQSTNPLDVK RVRRMVSNRE SARRSRKRKQ AHLADLESQV DQLRGENASL FKQLTDANQQ  180
FTTSVTDNRI LKSDVEALRV KVKMAEDMVA RGALSCGLGH LGGLSPALNP RQACRVPNVL  240
AGLDYAGDDP FTAGLSPPEQ LQMPGGEVVD AWGWDNHPNG GMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRSRKRK
2142149RRSRKRKQ
3144149SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.10.0bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5000.0RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A0E0CGG20.0A0A0E0CGG2_9ORYZ; Uncharacterized protein
STRINGOMERI02G06430.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-37basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]