PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G06020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 231aa MW: 24902.8 Da PI: 10.1561 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 25 | 78 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rW +eLH+rFv+av++LGGs++AtPk+i++lm+ kgLtl+hvkSHLQ+YR OMERI02G06020.1 25 PRMRWPEELHRRFVDAVRRLGGSHEATPKRIMQLMDAKGLTLSHVKSHLQMYRN 78 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-29 | 21 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-15 | 23 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 25 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-8 | 26 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGGGAGSSSS SSSVVVRRYN RSEAPRMRWP EELHRRFVDA VRRLGGSHEA TPKRIMQLMD 60 AKGLTLSHVK SHLQMYRNSN NSSNVNRRRP VSPRIDWTTQ QDEQQRRQMS SSFSFLATRM 120 VLAAGIGSHG RHQRPHRRQG LPAGDDDGCE LTLSIGGGAG EESSDGGGSS ISDDDELLIQ 180 PAPNIINGST RPPPAANAGA ATKKEAMMSG QTAAAAINLE LTISSPCCWL I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-16 | 26 | 79 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-16 | 26 | 79 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-16 | 26 | 79 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-16 | 26 | 79 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108211 | 1e-168 | AK108211.1 Oryza sativa Japonica Group cDNA clone:002-140-D10, full insert sequence. | |||
GenBank | CT831400 | 1e-168 | CT831400.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624627.1 | 4e-97 | transcription factor HHO5 | ||||
TrEMBL | A0A0E0CG87 | 1e-169 | A0A0E0CG87_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G05980.1 | 1e-169 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19910 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-22 | G2-like family protein |