PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G05190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 22127.4 Da PI: 7.4108 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.5e-14 | 33 | 78 | 7 | 56 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 r+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g+ OMERI02G05190.1 33 RQRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 78 7889.7*********83...36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.637 | 23 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-27 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 33 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-25 | 33 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-7 | 33 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRPGPATWTP RTRSGGGRAI NKPTPGSWWA PPRQRPSGRY AAEIRDPAKK TPIWLGTFDS 60 AEAAARAYDA AARSLRGAAA RTNFPPSTSS SAPPPPHQPP QHLPPAAAAA ATSSHSSTVE 120 SWGVTVAAAA ASAGALGPLP PPRNGGGNAA ADEDCRSYCG SSSSVLCEDG ASGAGDEAAA 180 PRCSPLPFDL NLPASSPSAA AAAEADEMDW RCDTLLHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 33 | 89 | 19 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287559 | 0.0 | AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence. | |||
GenBank | AP004843 | 0.0 | AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11. | |||
GenBank | AP004871 | 0.0 | AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623823.1 | 8e-64 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0CFV6 | 1e-148 | A0A0E0CFV6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G05200.1 | 1e-123 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-09 | erf domain protein 9 |