PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G02280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 22922.9 Da PI: 10.2662 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.5 | 1.4e-35 | 18 | 103 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................s 66 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLl qakpai +tgt + OMERI02G02280.1 18 PKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLMQAKPAIVTATGTgvgadirralppfpklrplqvaP 103 6999***********************************************************77777777666666666666551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-29 | 22 | 80 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.613 | 23 | 77 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQVVAAAVGE RRMQGLGPKR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG 60 ETVQWLLMQA KPAIVTATGT GVGADIRRAL PPFPKLRPLQ VAPPPPHVGC RRGATRHVRG 120 IRRCHIGFAT MFAGHAAAAM PGLELGLSQD GHIGVLSARS LSQFYHQVGG AGAAGQLPHP 180 HHHHHHQHHQ QQEEDGEDDR DDGESDEESG Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004133 | 0.0 | AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03. | |||
GenBank | AP004768 | 0.0 | AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621786.1 | 1e-72 | transcription factor TCP20 | ||||
TrEMBL | A0A0E0CEM5 | 1e-150 | A0A0E0CEM5_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G02310.1 | 5e-99 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 6e-37 | TCP family protein |