PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G01870.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 1115aa MW: 123646 Da PI: 6.7401 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.3 | 2.6e-22 | 131 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ OMERI02G01870.2 131 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 220 99*****************************954.4444.49************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ OMERI02G01870.2 221 AKQQLLLGIRRA 232 677789999997 PP | |||||||
2 | Auxin_resp | 116.5 | 2.3e-38 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++ OMERI02G01870.2 257 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 340 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-42 | 121 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-39 | 124 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-18 | 130 | 220 | No hit | No description |
Pfam | PF02362 | 1.7E-20 | 131 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-20 | 131 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.646 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-33 | 257 | 340 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-9 | 987 | 1081 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.656 | 997 | 1081 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.53E-7 | 1009 | 1076 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MASSGGGGGG EEGEGRGATK VNQELWYACA GPLVSLPPQG SLVVYFPQGH SEQVAASMRK 60 DADAQIPSYP NLPSKLICIL HSVTMLADPD TDEVYARMTL QPVSNVTQCD KETLLASELA 120 LKQTRPRTEF FCKTLTASDT STHGGFSVPR RAAERIFPRL DFSMQPPAQE LQARDLHDNV 180 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD AKQQLLLGIR RANRQPTNLS 240 SSVLSSDSMH IGILAAAAHA AANNSQFTIY YNPRASPSEF VIPFAKYQKA VYGNQLSLGM 300 RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKTSHWRNIQ VAWDEAAPTE RRTRVSLWEI 360 EPIIAPFFIY PSPLFTAKRP RLPGMTDDET EMDGLLKRAM PWLGEEICKK DLNIQNSVVP 420 GLNLAQWMNM QHSSSLPSTV VQPELLNSLS GKPVQNLAAA DLSRQISFHP QFLQQNNIQF 480 NTALVPQQNQ QTEQLAEVIP TPNQLGSVII PQKVVQDCNS EQRQHVVTQP VQGSQPNVNI 540 PQAQLVVQAQ LQQPQVILQA QLQQPQVVVQ AQLQQTQPSV QSHTVLQGGL QQIQLLQQQQ 600 PHVQHQQIPQ QLHHHQQQTQ QLQPVQQVQQ SVQEHQQIKI QPVHVSMDAS MNTQVADHQM 660 KLQLLKALQP QQPLISEQQK MLLDLQQQVI NSQSAPQQCV QVTNQAISLH NSNTVQYPTQ 720 QKVQSHQVQG LTGNVIPNSK SDIVTSMGAS SLHAAGGRQL LKTDDVPSTS TSPSTNSNPV 780 LLQSIPSSSK NQSLTTAGKT SQSSVVLGPT IEQDTKPYQN VKQTVMIPKT TEQRPATGQD 840 CINNNPQMDY LDTSSSATSV CLSQADGSLQ QNFPPSSFHQ HHLLKDTVPD SEFEVTDPRN 900 NLLFGVNIDG QLGLPLNADL LADDIGTDKY MDQLPGNGIS NFISSKDSQQ ELSSSMISHS 960 FGVADMAFNS IDSAINDTPF LNRNSRSAAG PAHQRMRTYT KVHKRGAVGR SIDINRYSGY 1020 DELKHDVARM FGIEGQLGDQ NRVGWKLVYE DHEKDVLLVG DDPWEDFVKC VRCIRIFSPQ 1080 EEMQMRLVGD FGDSFLPNQA CSSSDGGHPW RITGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 21 | 361 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071297 | 0.0 | AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649755.1 | 0.0 | auxin response factor 21 | ||||
Swissprot | Q6YZW0 | 0.0 | ARFU_ORYSJ; Auxin response factor 21 | ||||
TrEMBL | A0A0E0CEF3 | 0.0 | A0A0E0CEF3_9ORYZ; Auxin response factor | ||||
STRING | ONIVA08G23730.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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