PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G00590.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 417aa    MW: 47789.9 Da    PI: 8.4358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G00590.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-06108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  OMERI02G00590.2 108 HTCQECGASFQKPAHLKQHMQSH 130
                      79*******************99 PP
2zf-C2H221.85e-07136160123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  OMERI02G00590.2 136 FICPleDCPFSYIRKDHLNRHMLKH 160
                      78*********************99 PP
3zf-C2H214.20.00013165190123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   C++ Fs k n++rH +  H
  OMERI02G00590.2 165 FTCSmdGCDRKFSIKANMQRHVKEiH 190
                      89********************9988 PP
4zf-C2H217.21.5e-05202226123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s Lk+H  +H
  OMERI02G00590.2 202 FVCKeeGCNKVFKYASRLKKHEESH 226
                      89*******************9988 PP
5zf-C2H217.71e-05293317223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OMERI02G00590.2 293 KCSfeGCECSFSNKSNLTKHIKAsH 317
                      688899***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355246284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5105127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.547108135IPR007087Zinc finger, C2H2
SMARTSM003550.0017108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576674.11E-11120162No hitNo description
Gene3DG3DSA:3.30.160.605.8E-12128162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808136165IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4136160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-8146196No hitNo description
Gene3DG3DSA:3.30.160.601.2E-8163192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572165195IPR007087Zinc finger, C2H2
SMARTSM003555.6E-4165190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-7197226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305202226IPR007087Zinc finger, C2H2
SMARTSM003550.0019202226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204226IPR007087Zinc finger, C2H2
SMARTSM003555.7234259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236259IPR007087Zinc finger, C2H2
SMARTSM0035515262283IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-6274314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-7275330No hitNo description
PROSITE profilePS5015711.365292322IPR007087Zinc finger, C2H2
SMARTSM003550.002292317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294317IPR007087Zinc finger, C2H2
SMARTSM003555.8323349IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280325349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKARRNQEPH SSLPAAAAPS SSRRSAGNHT SSQPRSPPMC SGDDIDGDTR VEATQHRDIR  60
RYKCEFCTVV RSKKCLIRAH MVAHHKEELD KSEIYKSNGE KVVHEGDHTC QECGASFQKP  120
AHLKQHMQSH SDERSFICPL EDCPFSYIRK DHLNRHMLKH QGKLFTCSMD GCDRKFSIKA  180
NMQRHVKEIH EDENATKSNQ QFVCKEEGCN KVFKYASRLK KHEESHVKLD YVEVVCCEPG  240
CMKTFTNVEC LRAHNQACHQ YVQCDICGEK HLKKNIKRHL RAHEEVPSTE RIKCSFEGCE  300
CSFSNKSNLT KHIKASHDQV KPFACRFTGC EKVFPYKHVR DNHEKSSAHV YTQANFTEMD  360
EQLLSCPRGG RKRKAVTVET LTRKRVTMHG DASSLDNGTE YLRWLLSGGD DDSSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1911229819174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1911229819174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626855.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0E0CDW20.0A0A0E0CDW2_9ORYZ; Uncharacterized protein
STRINGOMERI02G00620.10.0(Oryza meridionalis)
STRINGORGLA02G0010700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-123transcription factor IIIA