PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G38790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48182.6 Da PI: 8.6646 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+F+H++ OMERI01G38790.1 85 GEPDCTYYLRTGLCRFGMSCRFNHPQ 110 6899********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OMERI01G38790.1 130 GQPECQYYLKTGTCKFGPTCKFHHPR 155 5799********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.2e-12 | 177 | 201 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ OMERI01G38790.1 177 EKECAYYLKTGQCKYGNTCKFHHPE 201 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 338 | 363 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ OMERI01G38790.1 338 DQPECQYYMKTGDCKFGAVCKFHHPR 363 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 383 | 408 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ OMERI01G38790.1 383 PGEELCKFYSRYGICKFGANCKFDHP 408 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.5E-5 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 88 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 89 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 134 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 175 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 177 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 180 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 338 | 363 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 342 | 362 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 382 | 410 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 382 | 409 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 384 | 408 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 384 | 409 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 386 | 407 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPPPPSQ LPATAAATDD PSHDPAALYG 60 EGMWQQMTMS GSGAMQPGPY PERSGEPDCT YYLRTGLCRF GMSCRFNHPQ DRNLAIASAR 120 MKGEYPERMG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTLG YPLRPSEKEC 180 AYYLKTGQCK YGNTCKFHHP ELFNAMASSR GSPIYPSVHS SATAGPPSYT GTMASWAFPR 240 GSFIPSPRWQ NPSNYAPMIV PQGLVQVPSW NSYTGQMIPV SSSESRLQSP GAQQTYGTSQ 300 QVDASAGNQG MLSPYRSSSY PVPQYALQRE NVFPERPDQP ECQYYMKTGD CKFGAVCKFH 360 HPRVRSMPTP DCVLSPVGLP LRPGEELCKF YSRYGICKFG ANCKFDHPTM APPMGVYAYG 420 SASTNVPMVR RLLQSPSASA YTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK098948 | 0.0 | AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622340.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0E0CC56 | 0.0 | A0A0E0CC56_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G38240.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-147 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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