PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G35460.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 246aa    MW: 25980.5 Da    PI: 7.9941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G35460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-202574255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  OMERI01G35460.1 25 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 74
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-332583IPR001471AP2/ERF domain
SMARTSM003805.3E-362588IPR001471AP2/ERF domain
PfamPF008476.4E-142574IPR001471AP2/ERF domain
PROSITE profilePS5103225.6862582IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-222583IPR016177DNA-binding domain
PRINTSPR003676.3E-122637IPR001471AP2/ERF domain
CDDcd000182.03E-153384No hitNo description
PRINTSPR003676.3E-124864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDEHHSPVGS GGGGNAEGPD TPRRRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFETAEA  60
AARAYDEAAL RFRGSRAKLN FPEDARLYPA AATTAAAAAP PPAPVATASP SVAIYPGASQ  120
SAEYLRYQML LQGRHTTATP NQGTLLPFYG GGGSMTNPYG GGGGGGAMSG FLGSYYSFPT  180
SSVSVATVPS STSSAPGNYY SSHGDLHQSM SAAEEWNWEN ALVYPATAAS WSESSYHHHP  240
PPPHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-242682663ATERF1
3gcc_A6e-242682663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032860.0AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.11e-105ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0CAU01e-176A0A0E0CAU0_9ORYZ; Uncharacterized protein
STRINGOMERI01G34960.11e-177(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-20ethylene response factor 110