PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G31980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 426aa    MW: 49072.1 Da    PI: 6.259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G31980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.65.4e-281392743127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                      pG+rF P+d el+ ++L++k++g++l+    ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl+
  OMERI01G31980.1 139 PGIRFVPSDIELILDFLRPKLRGEQLPS--YMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLD 230
                      9************************988..799************9655541556********************66538*************9 PP

              NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                      +  ++ l+g k  L+++         k +++++ kt W m e+ 
  OMERI01G31980.1 231 AlsGNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 274
                      9888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.891137302IPR003441NAC domain
SuperFamilySSF1019411.12E-36137302IPR003441NAC domain
PfamPF023651.2E-14139274IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAESSESAWP QESQQLQISS TMPDGPAWPE EENLEQPLPL LMPWSENHRE QQLVPVPWLQ  60
QDQWQRLLPL RNQEQLQQEW HTQKRFLPLQ NQDLPLQNQE QQTLQDQDQW HTQEQLIPLQ  120
NQEQQSQDQE ETRRYLGVPG IRFVPSDIEL ILDFLRPKLR GEQLPSYMHV CDVYSDHPKE  180
LTSKLGPSRE GNWYMFSPRN RKYNKGKRPS RSTGQLGFWK STTKNEAVLD ALSGNMLIGY  240
KACLTYHEYD ESMPTPKLKK ENAIKTPWKM WEFVCSNSNR PFDAEEEPMR LNDWVLCKVT  300
NKDNKVTTKK FKPQRSKKPK KPKKLQQEEQ PQNQGIVIRQ PSESGSASSS HQEIPGSSLP  360
GAGGDAAAAA VDPMPLHMIP PYGSSWNYFR TGVTADGIVM DDSTGVDSYG CVDGALNFAR  420
NIFYHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-1813930517171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032471e-172AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032601e-172AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149571e-172AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-172CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0protein ATAF2
TrEMBLA0A0E0C9C20.0A0A0E0C9C2_9ORYZ; Uncharacterized protein
STRINGORUFI01G38010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-20NAC domain containing protein 47