PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G30960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 163aa    MW: 18316.7 Da    PI: 6.1297
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G30960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.5e-11958150
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                     e+el+++r+   NReA r++R++Kka  + Lee+vk+L + N++L  +l+
  OMERI01G30960.1  9 EEELRKTRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRTTNQQLLRRLQ 58
                     789******************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-14977No hitNo description
SMARTSM003386.8E-12976IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9791158IPR004827Basic-leucine zipper domain
PfamPF077163.7E-121158IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-81259No hitNo description
CDDcd146865.37E-101467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0071294Biological Processcellular response to zinc ion
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASDENNVEE ELRKTRKPLG NREAVRKYRE KKKAHAAFLE EEVKKLRTTN QQLLRRLQGH  60
ISLEAEVVRL RALLFDIRGK IDAEIGTFPF QKQCSFGSVT CTDHSPCFNT STEVAVREES  120
SRPTIVDCGI DGTGIISHEL DIPEMVNSVD VIPSFVNSAS LTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032210.0AP003221.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0003D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618027.11e-114basic leucine zipper 23
RefseqXP_015618034.11e-114basic leucine zipper 23
TrEMBLA0A0E0C8X51e-116A0A0E0C8X5_9ORYZ; Uncharacterized protein
STRINGOMERI01G30450.11e-117(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.14e-26bZIP family protein