PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G28450.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 193aa MW: 20695.6 Da PI: 6.7254

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G28450.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	138	173	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ OMERI01G28450.3 138 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQ 173 5999****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	1.69E-8	139	175	No hit	No description
Pfam	PF00170	9.0E-9	139	173	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.9E-10	139	173	No hit	No description
CDD	cd14703	1.27E-16	140	173	No hit	No description
PROSITE pattern	PS00036	0	142	157	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAQLPPKIPV AAPGHHQHWA SAGGAGDAAW ADEFAEFAAS RRGAHRRSLS DSVAFVEVAP 60 AGCGAGGEFD RLDDDQLMSM FPDEGGSSAP GSDNGGSDSD GGGDKHAAAQ SDDGQHAAGE 120 PTQEQAAATS PTELIRDPKR VKRILANRQS AQRSRVRKLQ YISELERSVT TLQVYIHIRA 180 IRTYQRRQHQ TQN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108553	0.0	AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634100.1	4e-97	basic leucine zipper 6 isoform X1
Swissprot	Q5JMK6	3e-98	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A0E0C7W4	1e-138	A0A0E0C7W4_9ORYZ; Uncharacterized protein
STRING	OPUNC01G30390.1	1e-105	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-19	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]