PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G28450.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 265aa MW: 28400.4 Da PI: 6.7482

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G28450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	138	186	4	52
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l OMERI01G28450.1 138 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 186 5999**********************************88887666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	135	199	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.795	137	189	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-10	139	184	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.9E-12	139	193	No hit	No description
SuperFamily	SSF57959	6.54E-12	139	193	No hit	No description
CDD	cd14703	3.10E-23	140	191	No hit	No description
PROSITE pattern	PS00036	0	142	157	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAQLPPKIPV AAPGHHQHWA SAGGAGDAAW ADEFAEFAAS RRGAHRRSLS DSVAFVEVAP 60 AGCGAGGEFD RLDDDQLMSM FPDEGGSSAP GSDNGGSDSD GGGDKHAAAQ SDDGQHAAGE 120 PTQEQAAATS PTELIRDPKR VKRILANRQS AQRSRVRKLQ YISELERSVT TLQNEVSVLS 180 PRVAFLDQQR TILTVGNSHL KQRIAALAQD KIFKDAHQEA LRKEIERLRQ VYQQQNTKLS 240 GGLAADHAHV HGGPPPVRAE KELMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108553	0.0	AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634100.1	0.0	basic leucine zipper 6 isoform X1
Swissprot	Q5JMK6	0.0	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A0D9YF45	0.0	A0A0D9YF45_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0C7W2	0.0	A0A0E0C7W2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N2L4	0.0	A0A0E0N2L4_ORYRU; Uncharacterized protein
TrEMBL	B8A9R7	0.0	B8A9R7_ORYSI; Uncharacterized protein
STRING	OGLUM01G35480.1	0.0	(Oryza glumipatula)
STRING	OMERI01G27760.1	0.0	(Oryza meridionalis)
STRING	ORUFI01G34500.1	0.0	(Oryza rufipogon)
STRING	OS01T0756200-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	4e-56	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]