PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G24530.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 137aa MW: 15142 Da PI: 8.5993 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 50 | 4.7e-16 | 63 | 88 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg OMERI01G24530.2 63 FKTELCNKWEETGDCPYGDQCQFAHG 88 79***********************9 PP | |||||||
2 | zf-CCCH | 20.6 | 7.7e-07 | 101 | 126 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ Cr +++ C+yG rC+F H+ OMERI01G24530.2 101 YKTAVCRMVLAGDVCPYGHRCHFRHS 126 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-19 | 57 | 95 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-11 | 59 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-13 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-9 | 96 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-12 | 96 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.094 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-5 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MNQQSQAATA TPAAPNRKPR TSSNPTNPPS SQRAYDGGKK GDEQKAQPAD GGAELEVYNQ 60 GMFKTELCNK WEETGDCPYG DQCQFAHGVA ELRPVIRHPR YKTAVCRMVL AGDVCPYGHR 120 CHFRHSLSPA ERLLLRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-22 | 63 | 126 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108658 | 0.0 | AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631641.1 | 7e-88 | zinc finger CCCH domain-containing protein 9 isoform X1 | ||||
Swissprot | A2ZVY5 | 6e-89 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A0E0C681 | 1e-99 | A0A0E0C681_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G23770.1 | 1e-100 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 7e-49 | C3H family protein |