PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G24530.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 333aa    MW: 36056.5 Da    PI: 8.2048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G24530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.31.7e-15259284126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yGd+C+FaHg
  OMERI01G24530.1 259 FKTELCNKWEETGDCPYGDQCQFAHG 284
                      79***********************9 PP
2zf-CCCH18.92.7e-06297322126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ Cr  +++  C+yG rC+F H+
  OMERI01G24530.1 297 YKTAVCRMVLAGDVCPYGHRCHFRHS 322
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-18253291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10255290IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413258286IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-12259284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8292324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-11292323IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQEALVSPVR SALELKPFAF GDQRLASSPR YLPSGDDALY RCSSPFSPSF GFSSPSPLAT  60
SVSLSPSSSA SLIDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAEAAEEA  120
AALRRENAEL RVTNSDLARR LALLSGKHTA AVAVADEIRR LRLGEQNVAA ATKERTPEKL  180
AVLPKSISVR STSYLKMNQQ SQAATATPAA PNRKPRTSSN PTNPPSSQRA YDGGKKGDEQ  240
KAQPADGGAE LEVYNQGMFK TELCNKWEET GDCPYGDQCQ FAHGVAELRP VIRHPRYKTA  300
VCRMVLAGDV CPYGHRCHFR HSLSPAERLL LRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22259322467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631641.10.0zinc finger CCCH domain-containing protein 9 isoform X1
SwissprotA2ZVY50.0C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A0E0C6810.0A0A0E0C681_9ORYZ; Uncharacterized protein
STRINGOMERI01G23770.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-50C3H family protein