PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G20790.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 1426aa MW: 147706 Da PI: 3.684 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.5 | 4.5e-13 | 1374 | 1398 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C tlL+YP+GAp+V+C+lC +V OMERI01G20790.3 1374 CGHCATLLMYPFGAPAVKCSLCLFV 1398 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.4E-8 | 1372 | 1399 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.5E-10 | 1374 | 1398 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 1426 aa Download sequence Send to blast |
MASSPETAKP LESARMGSPP PSHSPSPPPL QGDPSLPTDA PPPEPSPQPH HATPIPPPSP 60 GQATEGWPRA EEPQPPIDGT PGAAGPPAPP SFFPSLELGT SAAPPALEAA AAGAGQPGSP 120 SPRPPAEPAA EFYPGSAASS PSSSSYETAE DDSPASPPPT PPPLVLCASP DSSYTESSPA 180 RDRFGDEEGS HAAPEPPPPP TPLEGGPDAS SAEPAAMASP AREPMGSHTA PEPPTPPLES 240 GQEGFQQQQP HPQPTTHPEC DSSEPAEPLL PPTSPAEIAH TSPDSAEVDV VAVSPEEAPG 300 STAAMEVMYG ETDASAVSVS PVLGSVETDA AEIDVIAGMQ EEAPGSTVAM EVMYRENDTA 360 AVSVSPVLES REPDAAEVDV VAGVQEEAHG SKFSMEVTYR ETDAAAVSVS PVLGSGEPDK 420 AEIDVVEEMQ EEAHASRFAM EAMYEEPDAS AVSVSPVLES VEPDVTEIDV VSEMQEEEAP 480 DSTLAMEVTS GETDTAAVSA FPVLDGGDPD AAEKNVVAGM QEEEAPDSTL AIEVTSGETD 540 TAAVSVSPVL EGVDPDAAEI DVVAGMQEEA PGSTLAMEVT YRETDATAAS VSTVLDSRDP 600 DAAEVDVVVG MQEQAAGSAL AMLVTYGETD TSAVSVSPVL ESGEPDAAQI DVVAGMQEEA 660 PGSTLAMEVT YREVDAATVS VSLVLESVEP DAAKIDVVAR IQEEAPGSKL AMEVMYGETG 720 TAAVSVPLVL ESGEEGSLQE SMQRPSSPTM NIEQESMQRP FSPTIGIETS SPEMAPAGSE 780 NCKVSWLPLP PPTPLGESMP SLPVAAAPKV LLVMPEEAVE SVPSSEALDA EKPASITQAE 840 PSSPNTPPPG FENFKSSWLP LPTTPPPVET TDVLPDVVVT KAMEAPIEEV SRPLPALEVT 900 NMESDTVLSI LPTTVLPTEG TEGLLQQPLL RPPSPVVQSE PCLQNEMAPP GFENFKSSCS 960 AEEIAPPGSD NFKSSSEPCS PEEMAPPGFE NFKSSSEPCS QEEMAPPGFE NFKSSWPPLP 1020 TLPQTVPDAA AADALAATVE EAAGPPPALE LEAMDVDMDA IHPPPLPFDS GVESSQKPLP 1080 RAPSPIMQEA PCSPDRAPPG FETYKSSQLL LPSPSLAQTT NVRQDQSVTE PVSVIEEAPQ 1140 PLHSVEVMGA HMDAVPPLLP SFESGEDGLS PQQFAQPPPA EKDTTTCLPD MVHSGCDNSE 1200 PSQLLSLPAV ISPVQTPDGL ADVPAIDRVA MALEESPQRP LVSGEMEAGT VPIQSSPLKN 1260 VSEGSLPQLE SESHSPTSQA ADSLLDASDS KSVAVASEEM SQLPLASQAT TTDLDSTTAM 1320 QPQSEGIVDE SLQPQHPPSS TAHDSPCLQN SVPLVPPPPS PYLNKAHEVG KVHCGHCATL 1380 LMYPFGAPAV KCSLCLFVTE IGERNVRRRL SIEQPTRTNS SGLAEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002866 | 0.0 | AP002866.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0410E01. | |||
GenBank | AP003314 | 0.0 | AP003314.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046B10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621461.1 | 0.0 | protein LOL5 | ||||
TrEMBL | A0A0E0C4L6 | 0.0 | A0A0E0C4L6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G19810.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-11 | lsd one like 2 |