PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 251aa    MW: 26918.1 Da    PI: 8.2039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31141199159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY g Hnh+
  OMERI01G18980.1 141 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERARDDARFVVTTYDGVHNHP 199
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33128201IPR003657WRKY domain
SuperFamilySSF1182903.66E-28134201IPR003657WRKY domain
PROSITE profilePS5081133.35136201IPR003657WRKY domain
SMARTSM007741.1E-36141200IPR003657WRKY domain
PfamPF031062.4E-24142199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSLYSSLLS LSESPAEYRQ VGGGRYAGED VVVDDDDMAA VADAVSSYLS FDMDDVEYYT  60
PEVGFHSKQH NLPPPPPPVA AAPSLEAGGG REQSRREAAV NHGKMDRGPA PVSGGAATGG  120
VPRSKNGSKI AFKTRSEVDV LDDGYRWRKY GKKMVKNSPN PRNYYRCSSE GCRVKKRVER  180
ARDDARFVVT TYDGVHNHPA PLHLRPQLPP PGGYSIAGAP AVGAPHGRLG LEEAEVIALF  240
RGTAATSLLL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26132201877Probable WRKY transcription factor 4
2lex_A4e-26132201877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085220.0AK108522.1 Oryza sativa Japonica Group cDNA clone:002-144-B05, full insert sequence.
GenBankAY3418460.0AY341846.1 Oryza sativa (japonica cultivar-group) WRKY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635031.11e-148WRKY transcription factor SUSIBA2
TrEMBLA0A0E0C3W40.0A0A0E0C3W4_9ORYZ; Uncharacterized protein
STRINGOMERI01G18070.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-38WRKY DNA-binding protein 50