PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G18600.5

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 843aa MW: 91349.6 Da PI: 6.4347

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G18600.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.3e-06	461	483	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H OMERI01G18600.5 461 KSKPCTHYAR-GSCLKGDDCPYDH 483 6789****.*********** PP
2	zf-CCCH	30.8	5e-10	489	510	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ OMERI01G18600.5 489 PCHNFMENGMCIRGDKCKFSHV 510 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.967	430	457	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	431	455	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.079	431	456	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-4	458	484	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-5	459	485	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.187	459	486	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-5	461	484	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	487	511	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-6	488	511	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-7	489	510	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	489	509	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	489	512	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MEELSPPIPP AAAPATLAAA PPTTDVLSRR RAHLDSASYR ALSRLFSHCL HLHPPRHAAC 60 PDAEVETAAA AIPPGVSGGL PHVVSPPPAD VGADRGKNLE VEVALGNPTP HETPSTSASP 120 DAAVNPTTDP GVVPQGTEEG RVAGVERVEG LEEVVFAGGT SGEADADGDE LGAGAGLMGD 180 DEALRSMQAC LDGEDSELVI EMVGNDDEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG 240 DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGG FEEGEIEGDT QNLDADDSGN 300 SELQDDVELE EDFDSGRIEE DGSCGHDVKS NLHLIPQKGN GDTARNMLCN SKGDSQMHVA 360 RAQAVSYDEV LDWNETPLPD DKALKHGNTR KRTLTEERKA KKTKTKRIKR ALQREAEGVK 420 RLKLQPVIKP KVVKVCHFYL HGKCQQGNLC KFSHDTTPLT KSKPCTHYAR GSCLKGDDCP 480 YDHELSKYPC HNFMENGMCI RGDKCKFSHV IPTAEGPSTP DAKKSNASSV PEKANCQEQT 540 SRQKTSTVYS GEPATSVPIK HHSILKNLAG ISENAQKVPV RIPRGIQFLP FNKARPDSSI 600 LHQDVVSTEK HKNPTGGPHQ NFGRPQPADG KKLGKHNGHR SAPLLDEKDS SKQANLHPCS 660 EPKKNSLPTT AAVPSSVSTQ HEVSEASRIL QEFLFELGAN IYCQILKIGN YQMNALLFNP 720 QKKAHKDYQA QRLYRWLLHC CPRATRWLGV AQAYNSKSQF LIFISLQQQE ANSAAKGSMP 780 VCIHQLMSSL CHHISLQFVF FSKFQIHVIN RQEIICLFHQ SSSMVSSEMA SSFLRQKLYS 840 IAM

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MEELSPPIPP AAAPATLAAA PPTTDVLSRR RAHLDSASYR ALSRLFSHCL HLHPPRHAAC  60
PDAEVETAAA AIPPGVSGGL PHVVSPPPAD VGADRGKNLE VEVALGNPTP HETPSTSASP  120
DAAVNPTTDP GVVPQGTEEG RVAGVERVEG LEEVVFAGGT SGEADADGDE LGAGAGLMGD  180
DEALRSMQAC LDGEDSELVI EMVGNDDEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG  240
DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGG FEEGEIEGDT QNLDADDSGN  300
SELQDDVELE EDFDSGRIEE DGSCGHDVKS NLHLIPQKGN GDTARNMLCN SKGDSQMHVA  360
RAQAVSYDEV LDWNETPLPD DKALKHGNTR KRTLTEERKA KKTKTKRIKR ALQREAEGVK  420
RLKLQPVIKP KVVKVCHFYL HGKCQQGNLC KFSHDTTPLT KSKPCTHYAR GSCLKGDDCP  480
YDHELSKYPC HNFMENGMCI RGDKCKFSHV IPTAEGPSTP DAKKSNASSV PEKANCQEQT  540
SRQKTSTVYS GEPATSVPIK HHSILKNLAG ISENAQKVPV RIPRGIQFLP FNKARPDSSI  600
LHQDVVSTEK HKNPTGGPHQ NFGRPQPADG KKLGKHNGHR SAPLLDEKDS SKQANLHPCS  660
EPKKNSLPTT AAVPSSVSTQ HEVSEASRIL QEFLFELGAN IYCQILKIGN YQMNALLFNP  720
QKKAHKDYQA QRLYRWLLHC CPRATRWLGV AQAYNSKSQF LIFISLQQQE ANSAAKGSMP  780
VCIHQLMSSL CHHISLQFVF FSKFQIHVIN RQEIICLFHQ SSSMVSSEMA SSFLRQKLYS  840
IAM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0E0C3R0	0.0	A0A0E0C3R0_9ORYZ; Uncharacterized protein
STRING	OMERI01G17710.2	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	2e-06	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]