PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI01G18600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 842aa MW: 91323.8 Da PI: 6.3865 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.7 | 6.3e-06 | 461 | 483 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H OMERI01G18600.1 461 KSKPCTHYAR-GSCLKGDDCPYDH 483 6789******.************* PP | |||||||
2 | zf-CCCH | 30.8 | 5e-10 | 489 | 510 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ OMERI01G18600.1 489 PCHNFMENGMCIRGDKCKFSHV 510 7********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.967 | 430 | 457 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.079 | 431 | 456 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 431 | 455 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 458 | 484 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 459 | 485 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 459 | 486 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 461 | 484 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 487 | 511 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 488 | 511 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-7 | 489 | 510 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 489 | 509 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 489 | 512 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 842 aa Download sequence Send to blast |
MEELSPPIPP AAAPATLAAA PPTTDVLSRR RAHLDSASYR ALSRLFSHCL HLHPPRHAAC 60 PDAEVETAAA AIPPGVSGGL PHVVSPPPAD VGADRGKNLE VEVALGNPTP HETPSTSASP 120 DAAVNPTTDP GVVPQGTEEG RVAGVERVEG LEEVVFAGGT SGEADADGDE LGAGAGLMGD 180 DEALRSMQAC LDGEDSELVI EMVGNDDEQL QLDAMMNNLS GLIDDASACV MSAQSCGVSG 240 DKLQSDDRVA EEVKELGAGI GNDRSVCSLD HGSLDGGGGG FEEGEIEGDT QNLDADDSGN 300 SELQDDVELE EDFDSGRIEE DGSCGHDVKS NLHLIPQKGN GDTARNMLCN SKGDSQMHVA 360 RAQAVSYDEV LDWNETPLPD DKALKHGNTR KRTLTEERKA KKTKTKRIKR ALQREAEGVK 420 RLKLQPVIKP KVVKVCHFYL HGKCQQGNLC KFSHDTTPLT KSKPCTHYAR GSCLKGDDCP 480 YDHELSKYPC HNFMENGMCI RGDKCKFSHV IPTAEGPSTP DAKKSNASSV PEKANCQEQT 540 SRQKTSTVYS GEPATSVPIK HHSILKNLAG ISENAQKDVV STEKHKNPTG GPHQNFGRPQ 600 PADGKKLGKH NGHRSAPLLD EKDSSKQANL HPCSEPKKNS LPTTAAVPSS HTWMLFSDEP 660 VPMRLCSIFC IPHTSFIAVT PSCKLQLLMW TYFAELGANI YCQILKIGNY QMNALLFNPQ 720 KKAHKDYQAQ RLYRWLLHCC PRATRWLGVA QAYNSKSQFL IFISLQQQEA NSAAKGSMPV 780 CIHQLMSSLC HHISLQFVFF SKFQIHVINR QEIICLFHQS SSMVSSEMAS SFLRQKLYSI 840 AM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622402.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_015622403.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A0E0C3Q6 | 0.0 | A0A0E0C3Q6_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA01G0166700.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 2e-06 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|