PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G08610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 611aa    MW: 66349.6 Da    PI: 6.9603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G08610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12457503455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  OMERI01G08610.1 457 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 503
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-5056241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-15456507No hitNo description
SuperFamilySSF474591.07E-18456519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-18457516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEADEDGANG GTGGTWTDED RALTASVLGT DAFAYLTKGG GAISEGLVAA SLPVDLQNRL  60
QELVESDRPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PRDGEMGPAA SAGSDEAKQR  120
MRKRVLQRLH SAFGGVDEED YAPGIDQVTD TEMFFLASMY FAFPRRAGGP GQVFAAGVPL  180
WIPNTERNVF PANYCYRGYL ANAAGFRTIV LVPFETGVLE LGSMQQVVES SDTLQTIRSV  240
FAGAIGNKAG VQRHEGSGPT DKSPGLAKIF GKDLNLGRPS AGPGTGVSKA DERSWEQRTG  300
GGSSLLPNVQ RGLQNFTWSQ ARGLNSHQQK FGNGILIVSN EATPRNNGVV DSSTATQFQL  360
QKAPPLQKLP QLQKSHQLVK PQQLVSQQQL QPPRQIDFSA GTSSKPGVLT KKPAGIDGDG  420
AEVDGLCKDE GPPPALEDRR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  480
PNISKMDKAS LLGDAITYIT DLQKKLKEME VERERLIESG MIDPRDRTPR PEVDIQVVQD  540
EVLVRVMSPV ESHPVRAIFQ AFEEAEVHAG ESKITSNNGT AVHSFIIKCP GAEQQTREKV  600
IAAMSRVMNS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27451513264Transcription factor MYC2
5gnj_B2e-27451513264Transcription factor MYC2
5gnj_E2e-27451513264Transcription factor MYC2
5gnj_F2e-27451513264Transcription factor MYC2
5gnj_G2e-27451513264Transcription factor MYC2
5gnj_I2e-27451513264Transcription factor MYC2
5gnj_M2e-27451513264Transcription factor MYC2
5gnj_N2e-27451513264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438446RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLA0A0E0BZM80.0A0A0E0BZM8_9ORYZ; Uncharacterized protein
STRINGOMERI01G08610.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-71bHLH family protein