PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 381aa    MW: 40520.7 Da    PI: 9.0008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  OMERI01G05960.1 109 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 153
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.3E-4223IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.024102158IPR017930Myb domain
SuperFamilySSF466891.05E-16104158IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-19105157IPR006447Myb domain, plants
SMARTSM007172.6E-11106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-12106152IPR009057Homeodomain-like
CDDcd001675.27E-9109154No hitNo description
PfamPF002491.2E-10109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPA RGGGGGGGVR LFGVRLTSPP EVAMKKSASM SCIVSSLGGG  60
GGSGGSSPAG RGGGGGGGGG EGAAGYASDD PTHASCSTNG RAERKKGTPW TEEEHRMFLM  120
GLQKLGKGDW RGISRNFVVS RTPTQVASHA QKYFIRQTNS SRRKRRSSLF DMVPEMPMDE  180
SPVVIEQLML HSTQDEATSS NQLPISHLVK QKEPEFVRHL SDLQLRKHEE SEFTEPSLAA  240
LDLEMNHAAP FKTKSVLTMP TFYPALIPVP LTLWPPNVAN VGESGTNHEI LKPTPVNGKE  300
VINKADEVVG MSKLTIGDGS SNSIEPSALS LQLTGPTNTR QSAFHVNPPM AGPDLNKRNN  360
SPIHAVIPED SEAMAGKSVV I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716110.0AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621787.10.0transcription factor MYBS3-like
TrEMBLA0A0E0BYF40.0A0A0E0BYF4_9ORYZ; Uncharacterized protein
STRINGOMERI01G06020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-75MYB_related family protein