PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G04770.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 207aa MW: 21591.6 Da PI: 11.3076

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G04770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.6	2.3e-12	113	173	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ OMERI01G04770.2 113 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 173 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-13	112	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-11	113	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.185	114	177	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-16	117	176	No hit	No description
CDD	cd14704	4.78E-16	117	167	No hit	No description
SuperFamily	SSF57959	6.25E-12	117	174	No hit	No description
PROSITE pattern	PS00036	0	119	134	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLKEGG GNVTFSVGRP ERFGGGRGGE 60 RRGDTAGAGD GRGRRGKEDG KQQGGGGGGA AAAGGGQEQA PPARKRGRSA GDKEQNRLKR 120 LLRNRVSAQQ ARERKKAYMT ELEAKAKDLE LRNAELEQRV STLQNENNTL RQILKNTTAH 180 AGKRGGGGGG KGGDGGGGGK KHHFTKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	196	GGKGGDGGG
2	190	199	KGGDGGGGGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003215	1e-163	AP003215.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24.
GenBank	AP014957	1e-163	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455099.1	3e-57	transcription factor HY5 isoform X1
Refseq	XP_015617496.1	3e-57	transcription factor HY5
Refseq	XP_025815107.1	3e-57	transcription factor HY5-like
Refseq	XP_025815108.1	3e-57	transcription factor HY5-like
Swissprot	Q9SM50	7e-37	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A0E0BXU6	1e-140	A0A0E0BXU6_9ORYZ; Uncharacterized protein
STRING	OMERI01G04740.1	2e-69	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	9e-31	bZIP family protein

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]