PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 9185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 137aa MW: 15082 Da PI: 8.6292 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.9 | 2.8e-09 | 73 | 117 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 s+++GV+ + +g+++A+I k+ +lg ++t+ eAa a++ a 9185 73 SKFRGVTKHA-KGKFEARIGQmI-----GkKYRYLGLYDTEVEAAVAYDVA 117 79*****999.7******87744.....24**********99******976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.6 | 1 | 38 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-5 | 1 | 44 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-10 | 3 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-9 | 3 | 39 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 3.33E-15 | 73 | 133 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.36E-21 | 73 | 133 | No hit | No description |
Pfam | PF00847 | 9.6E-5 | 73 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-24 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.722 | 74 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-14 | 74 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 113 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
DAGKQVYLGG FDSEEQAAIA YDVIAVKCRG MKAQTNFDLR NYANELNALE SISKEDLVLS 60 LRRQSKGFSK GSSKFRGVTK HAKGKFEARI GQMIGKKYRY LGLYDTEVEA AVAYDVACVA 120 DRGLSAVTNF DISSYSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000588 | 0.0 | CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001419242.1 | 1e-95 | predicted protein, partial | ||||
Swissprot | B8AMA9 | 2e-44 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 2e-44 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A4S206 | 2e-94 | A4S206_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO97535 | 4e-95 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-27 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | 9185 |
Publications ? help Back to Top | |||
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