PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 5242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 237aa MW: 26759.8 Da PI: 5.4985 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.4e-10 | 100 | 125 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk +C+++ +tG+C Gd CkF H+ 5242 100 YKPDICKDYKQTGFCGWGDACKFLHD 125 899**********************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.24E-9 | 97 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.671 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-13 | 100 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-8 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF13920 | 2.5E-6 | 175 | 220 | No hit | No description |
SuperFamily | SSF57850 | 1.84E-10 | 176 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-10 | 176 | 222 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 1.28E-4 | 177 | 217 | No hit | No description |
SMART | SM00184 | 3.3E-5 | 177 | 217 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.114 | 177 | 218 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 195 | 204 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
FAFEGSKTVR ARGDMGATAE LEIDTSKEMD GRAMREQVLK QAIDRADGFE DDKKYRGTNA 60 YVDYRAGFRR EQTISSEKGR GAHGPMRAAT NIRSTFVMDY KPDICKDYKQ TGFCGWGDAC 120 KFLHDRGDYK QGWQLDKDWE QKEQARKAAE ARMAKLGEDG VAEESDEEYV NDIPESCAIC 180 DTSWLEAKFP VATACGHFFC ERCALQHNAK QTTCFTCDKE TGGTFNAAKE IIKRVKE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 1e-54 | 1 | 237 | 98 | 319 | RING finger protein 113A |
5z58_M | 1e-54 | 1 | 237 | 98 | 319 | RING finger protein 113A |
6ff4_t | 1e-54 | 1 | 237 | 98 | 319 | RING finger protein 113A |
6ff7_t | 1e-54 | 1 | 237 | 98 | 319 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000592 | 0.0 | CP000592.1 Ostreococcus lucimarinus CCE9901 chromosome 12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420631.1 | 1e-177 | predicted protein, partial | ||||
Swissprot | Q8GX84 | 7e-80 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q9FNG6 | 2e-79 | C3H51_ARATH; Zinc finger CCCH domain-containing protein 51 | ||||
TrEMBL | A4S5L8 | 1e-175 | A4S5L8_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO98924 | 1e-176 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1483 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01350.1 | 4e-76 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 5242 |