PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 26580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 26474.8 Da PI: 9.791 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.2 | 1.5e-27 | 45 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEE..E-SSSTTE.EEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkve..rsaedpkv.veitYegeHnhe 59 Dgy+WrKYGqK++kgs fprsYYrCt +gCp++kk e r++ed+++ +++ YegeH+h 26580 45 ADGYRWRKYGQKNIKGSSFPRSYYRCTERGCPARKKTElrRASEDGEMeTVVCYEGEHTHA 105 7**********************************976558999999945678*******7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-27 | 33 | 107 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.307 | 39 | 107 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-23 | 41 | 107 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-29 | 44 | 106 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-24 | 46 | 104 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MATTTTHGTR VYDDDAGDRP RRSYPHSTSR STTTVAAHAP SSAHADGYRW RKYGQKNIKG 60 SSFPRSYYRC TERGCPARKK TELRRASEDG EMETVVCYEG EHTHAKPSGG GGRAETLAPG 120 STKSFGTRAS GDSTATNARR GTTRFHDVCG GGGGGGKSSS GQATESDAED SAASEEDSTR 180 TAVEHDETEA LGVRKIAKWS SITDDVQRIR TVRARAPRIL VQRRRGEEAE TRRESAEPVV 240 RRHG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-19 | 46 | 109 | 16 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP000591 | 0.0 | CP000591.1 Ostreococcus lucimarinus CCE9901 chromosome 11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001420519.1 | 1e-175 | predicted protein | ||||
TrEMBL | A4S4Z2 | 1e-174 | A4S4Z2_OSTLU; Uncharacterized protein | ||||
STRING | ABO98812 | 1e-174 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP469 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01080.1 | 1e-19 | WRKY DNA-binding protein 58 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 26580 |