PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 17449
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 718aa    MW: 76269.4 Da    PI: 4.9686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
17449genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-0861111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                      rg W + E++ l++av+++G g W++  +         Rt+ q+k++w+++
            17449  61 RGYWQAPEEQALKRAVRKHGIGAWEKMRNDPEfaalRSRTGVQLKDKWRNL 111
                      799***********************888888*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-1460116IPR009057Homeodomain-like
SuperFamilySSF466892.04E-1260114IPR009057Homeodomain-like
SMARTSM007172.5E-660114IPR001005SANT/Myb domain
PROSITE profilePS500908.17761112IPR017877Myb-like domain
PfamPF002492.0E-561111IPR001005SANT/Myb domain
CDDcd116602.63E-1564113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAAKAQGARD AAPVPSGKAR GASASAKRAK EDARKRAGKR GAAATARDDG ATTAREASGV  60
RGYWQAPEEQ ALKRAVRKHG IGAWEKMRND PEFAALRSRT GVQLKDKWRN LIKFQHLRVD  120
EAAKVPYKAA VKAANAANAT GGKAGRGADK GGARGASAAN AKGGKAASAA SARKTNAAVN  180
AKKGKGASAS SAKKGAGGKK TMAVSRDALP KKGGGGTTNV AGAPTMSAKE KLKARFGHRH  240
DDDDQDEDDE YEEIAGVGRP STGAKAKFDA GVDAVVTQLK AKRAGMVNEV EHAESELARM  300
KTVVEEAEAV YSSARARVHE ALVGAHGEDE YYEDGEGEDT ADWDKYLHFG EHEDEDDDEE  360
VARAAEAAAE AHEAVKRGIK KPSEKKPSEK RPKAAVDEDA TDHDDDSDEE IDEDLVDSDE  420
DDDDLDEEER AVRIANEVLA EAGLPPMHEI EHVLLTELKK LEAANAAVVH ARLALEAVDA  480
EFAEALVSAH NNAAANAKAT TSAAFDHDDD LEKSFTMDGD EDEDDEDEDD EVDDEDDEEI  540
DEDLVDDEEI EEEIRPQPTS KSKAKPKAKS APSQNDGADA AGGRVVEDRR YGIYDARRYR  600
SEAENDAAEA AASKGGKVSA ASKRKAPTSS SAAAPKKSAK QTVKVEDTEI WYEQPNVAKA  660
GAAVMPKKSQ QFRAAPQSAP GSIPSWRRKR AATRVTIGRP VAGPTSWAAI GQHIIKE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005910.0CP000591.1 Ostreococcus lucimarinus CCE9901 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420545.10.0predicted protein
TrEMBLA4S5450.0A4S545_OSTLU; Uncharacterized protein
STRINGABO988380.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP413177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.19e-11MYB_related family protein