PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 16521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 28152.1 Da PI: 8.9058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 67 | 88 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F ++L Hi t H 16521 67 ECPFCKKAF-VAHYLAAHIATkH 88 5********.*********9988 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00087 | 95 | 119 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C+++F + +L rH + H 16521 95 ECHfkGCSECFVTTKDLDRHVALvH 119 69999***************98877 PP | |||||||
3 | zf-C2H2 | 12.4 | 0.00048 | 123 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg +Fs+k ++H H 16521 123 HTCKLCGLPFSTKQAKEKHEAFgH 146 79*****************87666 PP | |||||||
4 | zf-C2H2 | 15.6 | 4.7e-05 | 154 | 177 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 Cp Cgk+F++ ++++ H + H 16521 154 CPvaGCGKMFKHADSMRAHVMQfH 177 9999***************98766 PP | |||||||
5 | zf-C2H2 | 13.4 | 0.00023 | 186 | 211 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ dC+++F++k + ++H + H 16521 186 YQCEhpDCDETFRTKRERTKHSKEvH 211 99*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 15 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.08E-5 | 80 | 132 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 82 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.21 | 94 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.19E-6 | 123 | 174 | No hit | No description |
SMART | SM00355 | 1.4 | 123 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.9E-7 | 150 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.245 | 152 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 152 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.365 | 186 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0031 | 186 | 211 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 188 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGDGERDWRE RFLELTPSAV VEAATEMRRL LTVVELTRYI SAHGGGEVPS NVSTSKWFAK 60 TKVRREECPF CKKAFVAHYL AAHIATKHTG IKPVECHFKG CSECFVTTKD LDRHVALVHE 120 HKHTCKLCGL PFSTKQAKEK HEAFGHAEGK SVACPVAGCG KMFKHADSMR AHVMQFHGDD 180 SERRMYQCEH PDCDETFRTK RERTKHSKEV HSSTFPKKRR KPSTQTRLKS PTKMSRWLLD 240 EDDDEP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 221 | PKKRRKP |
2 | 216 | 220 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000588 | 0.0 | CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001419179.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S1N3 | 0.0 | A4S1N3_OSTLU; Uncharacterized protein | ||||
STRING | ABO97472 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 6e-08 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | 16521 |