PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542794.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 45aa MW: 4845.46 Da PI: 8.7842 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd +l+ + +G+g+W++++++ KN542794.1_FGP003 14 KGPWTAEEDAKLLAYTSTHGTGNWTSVPQR 43 79*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-14 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.11E-10 | 8 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.033 | 9 | 45 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-8 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-6 | 16 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 45 aa Download sequence Send to blast |
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS THGTGNWTSV PQRAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542794.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118670 | 5e-68 | AC118670.2 Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 5e-68 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 5e-68 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649927.1 | 1e-24 | PREDICTED: myb-related protein Zm38-like | ||||
Swissprot | Q9LSI7 | 9e-18 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A0P0VX49 | 1e-25 | A0A0P0VX49_ORYSJ; Os03g0296000 protein | ||||
STRING | OS03T0296000-00 | 2e-26 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 4e-20 | MYB family protein |
Publications ? help Back to Top | |||
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