PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN542507.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 24343.1 Da PI: 10.9148 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.9 | 5.8e-21 | 21 | 114 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ffkvl + ++rl +p +f++++ +g ke s+ tle +sgr+W v + r++ +++++t+GW +Fv+++ L+e +fvvF++ KN542507.1_FGP001 21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesrkaKGLKEASMAATLEGPSGRTWLVVI--RRTAEGTFFTSGWPKFVQDQALRELEFVVFRY 107 56666..3444.457********888******996666799*****************..******************************** PP -SSSEE. CS B3 85 dgrsefe 91 dg+++f+ KN542507.1_FGP001 108 DGNTRFT 114 *998885 PP | |||||||
2 | B3 | 50.1 | 4.8e-16 | 116 | 191 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++p f ++h ++e ++++l+d+ g++W+v +i ++++r l++GW F++ n L+egD +vF+l ef +v++fr KN542507.1_FGP001 116 MRFPTGFSRQHL--PRERTDVVLRDPGGKVWSVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELAAAAEF--RVHIFR 191 678999999995..345679***************4.444455..9**********************9876666..999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 16 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-19 | 16 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.148 | 18 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.51E-16 | 19 | 114 | No hit | No description |
SMART | SM01019 | 1.8E-10 | 21 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-18 | 21 | 114 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.69 | 101 | 193 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-20 | 115 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-20 | 116 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-4 | 116 | 193 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.36E-19 | 116 | 191 | No hit | No description |
Pfam | PF02362 | 2.4E-14 | 116 | 191 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MPGAGGKKKS PWASGERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESRK AKGLKEASMA 60 ATLEGPSGRT WLVVIRRTAE GTFFTSGWPK FVQDQALREL EFVVFRYDGN TRFTAMRFPT 120 GFSRQHLPRE RTDVVLRDPG GKVWSVLYIP NTRDRLSRGW CAFARGNCLE EGDYCVFELA 180 AAAEFRVHIF RVVEPAVPAV RLRRVTVTCG RGPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN542507.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003229 | 1e-158 | AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10. | |||
GenBank | AP014957 | 1e-158 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-158 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614236.1 | 2e-77 | B3 domain-containing protein Os01g0723500 | ||||
Swissprot | Q8S2E6 | 2e-78 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A0D3ETI0 | 1e-145 | A0A0D3ETI0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G29350.1 | 1e-146 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31650.1 | 1e-11 | B3 family protein |